STRINGSTRING
Phatr44534 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44534" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44534Predicted protein (417 aa)    
Predicted Functional Partners:
Phatr16493
Predicted protein (214 aa)
     
  0.991
Phatr38893
Predicted protein (174 aa)
       
  0.990
Phatr19669
Predicted protein (202 aa)
       
  0.976
Phatr49220
Predicted protein (217 aa)
       
  0.974
Phatr49632
Predicted protein (420 aa)
       
  0.850
Phatr28874
Predicted protein (410 aa)
       
  0.850
sUbi
Ubiquitin-like protein (268 aa)
       
  0.765
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.765
Phatr49037
Predicted protein (205 aa)
       
  0.765
Phatr43830
Vacuolar protein sorting-associated protein 35 (1712 aa)
     
 
  0.735
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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