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STRINGSTRING
Phatr44555 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44555" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44555Predicted protein (743 aa)    
Predicted Functional Partners:
Phatr45441
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
 
  0.998
Phatr46837
Predicted protein (997 aa)
     
 
  0.996
Phatr45727
Predicted protein (948 aa)
     
 
  0.996
Phatr49433
Predicted protein (705 aa)
     
   
  0.994
Phatr50246
Predicted protein (823 aa)
     
   
  0.989
Phatr32646
Predicted protein (268 aa)
     
      0.989
Phatr46994
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (730 aa)
     
 
  0.987
Phatr13235
RNA helicase; Glycine decarboxylase T-protein, aminomethyl transferase, GDCT, GCST, GCVT (512 aa)
     
 
  0.977
helicase_6
Predicted protein; Belongs to the DEAD box helicase family (476 aa)
     
      0.975
Phatr25549
Predicted protein (512 aa)
     
      0.975
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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