STRINGSTRING
Phatr44595 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44595" - Mitotic cohesin in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44595Mitotic cohesin (663 aa)    
Predicted Functional Partners:
Phatr54417
Cohesin (1455 aa)
     
  0.988
SMC3
Predicted protein (1232 aa)
     
  0.988
SMC1
Predicted protein (1237 aa)
     
  0.987
Phatr44165
Predicted protein (1356 aa)
     
  0.939
Phatr50138
Predicted protein (1699 aa)
     
  0.938
SMC5
Predicted protein (1099 aa)
     
  0.898
SMC2
Predicted protein (1213 aa)
     
  0.888
Phatr10628
Predicted protein (575 aa)
     
  0.862
SMC6
Predicted protein (220 aa)
     
  0.862
Phatr43362
Predicted protein (398 aa)
       
  0.842
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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