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STRINGSTRING
Phatr44609 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44609" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44609Predicted protein (1541 aa)    
Predicted Functional Partners:
Phatr9649
Predicted protein; Belongs to the SKP1 family (102 aa)
       
      0.518
Phatr45548
Predicted protein (613 aa)
     
 
  0.488
Phatr54092
Chromatin remodeling-related protein (674 aa)
     
 
  0.461
Phatr45779
Predicted protein (343 aa)
     
 
  0.454
H2A-m1
Histone H2A (138 aa)
     
 
  0.448
Phatr43759
Predicted protein (462 aa)
     
 
  0.444
Phatr42944
Predicted protein (1422 aa)
     
 
  0.439
Phatrdraft286
Predicted protein (104 aa)
     
 
  0.400
Phatr44442
Predicted protein (269 aa)
     
 
  0.400
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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