STRINGSTRING
Phatr44632 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44632" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44632Predicted protein (1440 aa)    
Predicted Functional Partners:
Phatr43990
Predicted protein (313 aa)
       
  0.980
helicase_5
Predicted protein (428 aa)
       
  0.976
Phatr47759
Predicted protein (790 aa)
     
  0.956
Phatr13520
Predicted protein (127 aa)
       
  0.831
Phatr43680
Predicted protein (1458 aa)
     
 
  0.816
Phatr42758
Predicted protein (1346 aa)
     
   
  0.660
Phatr11441
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1212 aa)
     
 
  0.657
Phatr46643
Predicted protein (606 aa)
     
  0.631
Phatrdraft920
Predicted protein (575 aa)
     
  0.593
Phatr47365
Predicted protein (603 aa)
     
  0.593
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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