STRINGSTRING
Phatr44908 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44908" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44908Predicted protein (877 aa)    
Predicted Functional Partners:
FAO1
Peroxisomal bifunctional enzyme (767 aa)
   
  0.778
Phatr35240
Predicted protein (684 aa)
   
  0.778
SKT1
Succinyl-coenzyme A-3-oxo-acid coenzyme a-transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (511 aa)
       
  0.706
Phatr44982
Predicted protein (203 aa)
   
  0.689
ACC2
Biotin carboxylase (2282 aa)
     
  0.675
Phatr29633
Predicted protein (949 aa)
         
  0.648
ACC1
Acetyl-coa carboxylase (2092 aa)
     
  0.620
Phatr1690
Predicted protein (495 aa)
       
  0.612
GDCP
Glycine decarboxylase p-protein (1005 aa)
       
  0.604
Phatr39237
Predicted protein (348 aa)
   
 
  0.588
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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