STRINGSTRING
Phatr44920 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44920" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44920Predicted protein (417 aa)    
Predicted Functional Partners:
Phatr5156
Predicted protein (188 aa)
   
          0.526
Phatr4950
Predicted protein (193 aa)
   
          0.526
Phatr48891
Putative uncharacterized protein (427 aa)
   
          0.526
Phatr38702
Predicted protein (348 aa)
   
          0.526
Phatr38694
Predicted protein (348 aa)
   
          0.526
Phatr34321
Predicted protein (302 aa)
   
          0.526
Phatr10655
Predicted protein (230 aa)
   
          0.526
Phatr16363
Predicted protein (199 aa)
   
          0.525
Phatr9147
Predicted protein (137 aa)
   
          0.511
Phatr42566
Predicted protein (220 aa)
       
  0.410
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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