STRINGSTRING
Phatr44981 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44981" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44981Predicted protein (367 aa)    
Predicted Functional Partners:
Phatr43748
Predicted protein (232 aa)
       
  0.658
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (421 aa)
   
   
  0.562
Phatr48206
Predicted protein (794 aa)
   
   
  0.562
Phatr46971
Predicted protein (696 aa)
   
   
  0.562
Phatr46734
Predicted protein (894 aa)
   
   
  0.562
Phatr38848
Predicted protein (552 aa)
   
   
  0.562
Phatr17228
Predicted protein (389 aa)
   
   
  0.562
Phatr51407
Pol1-like DNA polymerase (774 aa)
   
   
  0.552
Phatr9612
Predicted protein (287 aa)
     
 
  0.549
Phatr4059
Predicted protein (312 aa)
     
 
  0.549
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (7%) [HD]