STRINGSTRING
Phatr45054 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45054" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45054Predicted protein (429 aa)    
Predicted Functional Partners:
Phatr49253
Predicted protein (566 aa)
   
 
  0.783
Phatr31367
Predicted protein (819 aa)
   
 
  0.751
Phatr43792
Predicted protein (154 aa)
   
 
  0.547
GLXI
Lactyolglutathione lyase (310 aa)
   
 
  0.547
GDCP
Glycine decarboxylase p-protein (1005 aa)
              0.489
Phatr49591
Predicted protein (202 aa)
   
 
  0.469
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
         
  0.445
ACL
Atp-citrate synthase (1082 aa)
         
  0.435
Phatr54051
Pds-like2, phytoene desaturase-like protein (605 aa)
   
          0.415
Phatr17427
Predicted protein (695 aa)
   
   
  0.414
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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