STRINGSTRING
Phatr45108 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45108" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45108Predicted protein (571 aa)    
Predicted Functional Partners:
Phatr48788
Predicted protein (424 aa)
 
            0.503
PHATR_3578
Pseudouridine synthase (293 aa)
     
   
  0.438
Phatr3351
Predicted protein (281 aa)
   
   
  0.431
Phatr19122
Predicted protein (322 aa)
   
   
  0.431
Phatr20773
Predicted protein (484 aa)
     
   
  0.428
Phatr11965
Predicted protein (194 aa)
     
   
  0.428
Phatr50185
Pseudouridine synthase (373 aa)
     
   
  0.420
Phatr47935
Pseudouridine synthase (308 aa)
     
   
  0.420
Phatr46408
Pseudouridine synthase (347 aa)
     
   
  0.420
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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