STRINGSTRING
Phatr45115 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45115" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45115Predicted protein (1834 aa)    
Predicted Functional Partners:
CDC6
Predicted protein (1107 aa)
     
0.997
MCM5
Predicted protein (667 aa)
   
  0.993
Phatr42935
Predicted protein (588 aa)
     
  0.993
MCM4
Predicted protein (791 aa)
   
  0.993
Phatr981
Predicted protein (467 aa)
   
  0.991
MCM2
Predicted protein (808 aa)
   
  0.991
Phatr9344
Predicted protein (389 aa)
     
  0.988
MCM7
Predicted protein (618 aa)
   
  0.988
Phatr52561
Predicted protein (675 aa)
   
  0.984
MCM6
Predicted protein (660 aa)
   
  0.984
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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