STRINGSTRING
Phatr45196 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45196" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45196Predicted protein (473 aa)    
Predicted Functional Partners:
Phatr28285
Predicted protein (553 aa)
     
 
    0.654
Phatr23164
Predicted protein (489 aa)
     
  0.587
Phatr44426
Predicted protein (638 aa)
     
  0.575
Phatr46169
Predicted protein (520 aa)
     
        0.561
Phatr23865
Predicted protein (720 aa)
       
  0.524
Phatr259
Predicted protein (944 aa)
         
  0.521
Phatr19982
Predicted protein (2347 aa)
       
    0.480
Phatr21983
Predicted protein (484 aa)
     
    0.464
Phatr24922
Predicted protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (111 aa)
     
 
    0.436
Phatr13192
Predicted protein (74 aa)
     
 
  0.428
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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