STRINGSTRING
Phatr45238 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45238" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45238Predicted protein (196 aa)    
Predicted Functional Partners:
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
         
  0.694
Phatr18027
Predicted protein (706 aa)
         
  0.694
Phatr42807
Predicted protein (339 aa)
   
   
  0.528
Phatr14645
Predicted protein (97 aa)
   
   
  0.528
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
              0.499
Phatr24739
Predicted protein (1594 aa)
              0.499
Phatr47067
Predicted protein (1237 aa)
              0.473
Phatr19579
Predicted protein (843 aa)
         
  0.414
Phatrdraft1331
Predicted protein (548 aa)
         
  0.414
Phatr44627
Predicted protein (652 aa)
         
  0.414
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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