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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr45250 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45250" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45250Predicted protein (743 aa)    
Predicted Functional Partners:
Phatr43101
Predicted protein (330 aa)
     
   
  0.774
Phatr34116
Predicted protein (671 aa)
     
      0.601
Phatr45606
Predicted protein (366 aa)
           
  0.582
Phatr40690
Predicted protein (331 aa)
           
  0.582
GluRS_2
Glutamyl-trna synthase; Belongs to the class-I aminoacyl-tRNA synthetase family (588 aa)
           
  0.580
Phatr54049
Acetyl-coa transporter (646 aa)
     
   
  0.550
Phatr42570
Predicted protein (1267 aa)
           
  0.544
Phatr42975
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (689 aa)
     
      0.536
Phatr47275
Predicted protein (1055 aa)
       
      0.532
Phatr45316
Predicted protein (1451 aa)
       
      0.532
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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