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STRINGSTRING
Phatr45251 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45251" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45251Predicted protein (656 aa)    
Predicted Functional Partners:
Phatr17967
Putative tRNA (cytidine(32)/guanosine(34)-2’-O)-methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (315 aa)
     
   
  0.926
PHATR_3578
Pseudouridine synthase (293 aa)
     
 
  0.923
Phatr5217
Pseudouridine synthase (216 aa)
     
 
  0.892
Phatr36743
Predicted protein (149 aa)
   
 
  0.855
Phatr43447
Predicted protein (671 aa)
     
      0.813
Phatr9197
Predicted protein (64 aa)
     
   
  0.798
Phatr46516
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1051 aa)
   
   
  0.781
Phatr20773
Predicted protein (484 aa)
     
 
  0.759
Phatr11965
Predicted protein (194 aa)
     
 
  0.759
Phatr14032
Predicted protein; Belongs to the DEAD box helicase family (467 aa)
     
 
  0.742
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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