STRINGSTRING
Phatr45251 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45251" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45251Predicted protein (656 aa)    
Predicted Functional Partners:
Phatr9235
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
   
        0.808
Phatr43447
Predicted protein (671 aa)
      
      0.805
Phatr47176
Predicted protein (435 aa)
      
 
  0.692
Phatr25394
Predicted protein (528 aa)
      
 
  0.692
Phatr43574
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
      
        0.686
Phatr21996
Predicted protein (417 aa)
      
      0.679
Phatr15862
Predicted protein (530 aa)
      
      0.679
Phatr14032
Predicted protein (467 aa)
      
 
  0.676
Phatr47058
Predicted protein (606 aa)
      
      0.676
Phatr46516
Predicted protein (1051 aa)
   
   
  0.675
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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