STRINGSTRING
Phatr45278 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45278" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45278Predicted protein (482 aa)    
Predicted Functional Partners:
Phatr47879
Predicted protein (1958 aa)
     
 
  0.980
Phatr47014
Predicted protein (446 aa)
     
 
  0.843
Phatr39864
Predicted protein (966 aa)
     
 
  0.843
Phatr11441
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1212 aa)
     
      0.703
Phatr18239
Predicted protein (1058 aa)
     
 
  0.703
Phatr36634
Predicted protein (323 aa)
     
 
  0.665
Phatr47388
Predicted protein (1057 aa)
     
 
  0.663
Phatr42758
Predicted protein (1346 aa)
     
 
  0.654
Phatr48451
Separase protein (2039 aa)
       
      0.651
Phatr38931
Predicted protein (1031 aa)
     
 
  0.558
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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