STRINGSTRING
Phatr45308 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45308" - Ribokinase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45308Ribokinase (709 aa)    
Predicted Functional Partners:
Phatr50182
Predicted protein (554 aa)
       
  0.786
Phatr42527
Predicted protein (522 aa)
       
  0.786
Phatr33450
Predicted protein (500 aa)
       
  0.786
ACC2
Biotin carboxylase (2282 aa)
   
   
  0.713
Phatr34120
Predicted protein (254 aa)
   
 
  0.671
Phatr9308
Predicted protein (310 aa)
   
 
  0.620
Phatr9211
Predicted protein (310 aa)
   
 
  0.620
FbaC1
Fructose-bisphosphate aldolase (402 aa)
     
  0.597
Phatrdraft375
Predicted protein (107 aa)
     
  0.597
Fba3
Cytosolic class II aldolase (400 aa)
     
  0.597
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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