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STRINGSTRING
Phatr45356 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45356" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45356Predicted protein (479 aa)    
Predicted Functional Partners:
Phatr8777
Predicted protein (110 aa)
     
 
  0.999
Phatr2182
Predicted protein (360 aa)
     
 
  0.999
Phatr21557
Predicted protein (348 aa)
     
 
  0.999
Phatr19647
Predicted protein (354 aa)
     
 
  0.999
Phatr12144
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (220 aa)
     
 
  0.998
Phatr43574
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
 
  0.998
Phatr43822
Predicted protein (341 aa)
     
      0.997
Phatr26035
Predicted protein (266 aa)
     
 
  0.997
Phatr12394
Predicted protein (260 aa)
     
 
  0.997
Phatr14145
Predicted protein (516 aa)
     
 
  0.996
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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