STRINGSTRING
Phatr45401 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45401" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45401Predicted protein (830 aa)    
Predicted Functional Partners:
Phatr17936
Predicted protein (206 aa)
       
  0.976
Phatr43830
Vacuolar protein sorting-associated protein 35 (1712 aa)
     
  0.968
Phatr12113
Predicted protein (284 aa)
     
  0.959
Phatr6635
Predicted protein (159 aa)
     
  0.698
Rab5c
Hypothetical protein (181 aa)
     
  0.698
Rab5a
Predicted protein (201 aa)
     
  0.698
Phatr30282
Predicted protein (341 aa)
     
  0.591
Phatr15031
Predicted protein (118 aa)
     
  0.591
Phatr34493
Predicted protein (447 aa)
       
      0.541
Phatr8365
Predicted protein (76 aa)
       
      0.516
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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