Phatr45441 protein (Phaeodactylum tricornutum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

Phatr45441

Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)

Predicted Functional Partners:

Phatr44555

0.998

Phatr45356

0.997

Phatr19647

0.988

Phatr51897

0.985

Phatr32646

0.982

Phatr8777

0.981

Phatr45888

0.981

Phatr32758

0.979

Phatr30585

0.979

Phatr3351

0.978

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Phatr19647	Phatr30585	Predicted protein	Predicted protein	0.851
Phatr19647	Phatr32646	Predicted protein	Predicted protein	0.840
Phatr19647	Phatr32758	Predicted protein	Predicted protein	0.851
Phatr19647	Phatr3351	Predicted protein	Predicted protein	0.958
Phatr19647	Phatr44555	Predicted protein	Predicted protein	0.811
Phatr19647	Phatr45356	Predicted protein	Predicted protein	0.998
Phatr19647	Phatr45441	Predicted protein	Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly	0.988
Phatr19647	Phatr45888	Predicted protein	Predicted protein	0.669
Phatr19647	Phatr51897	Predicted protein	Predicted protein	0.900
Phatr19647	Phatr8777	Predicted protein	Predicted protein	0.998
Phatr30585	Phatr19647	Predicted protein	Predicted protein	0.851
Phatr30585	Phatr32646	Predicted protein	Predicted protein	0.925
Phatr30585	Phatr3351	Predicted protein	Predicted protein	0.827
Phatr30585	Phatr44555	Predicted protein	Predicted protein	0.959
Phatr30585	Phatr45356	Predicted protein	Predicted protein	0.830
Phatr30585	Phatr45441	Predicted protein	Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly	0.979
Phatr30585	Phatr45888	Predicted protein	Predicted protein	0.869
Phatr30585	Phatr51897	Predicted protein	Predicted protein	0.996
Phatr30585	Phatr8777	Predicted protein	Predicted protein	0.892
Phatr32646	Phatr19647	Predicted protein	Predicted protein	0.840

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