Phatr45441 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Phatr45441

KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)

Predicted Functional Partners:

Phatr44555

0.998

Phatr45871

0.996

Phatr18579

0.995

SAS1

0.994

Phatr15481

0.994

Phatr11703

0.993

PHATR_1682

0.993

Phatr44047

0.993

Phatr42495

0.993

Phatr44242

0.992

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHATR_1682	Phatr11703	Phatr13428	Phatr11703	Anthranilate synthase. anthranilate synthetase. chorismate lyase	Predicted protein	0.999
PHATR_1682	Phatr15481	Phatr13428	Phatr15481	Anthranilate synthase. anthranilate synthetase. chorismate lyase	Predicted protein	0.994
PHATR_1682	Phatr18579	Phatr13428	Phatr18579	Anthranilate synthase. anthranilate synthetase. chorismate lyase	Predicted protein	0.985
PHATR_1682	Phatr42495	Phatr13428	Phatr42495	Anthranilate synthase. anthranilate synthetase. chorismate lyase	Predicted protein	0.999
PHATR_1682	Phatr44047	Phatr13428	Phatr44047	Anthranilate synthase. anthranilate synthetase. chorismate lyase	Predicted protein	0.998
PHATR_1682	Phatr44242	Phatr13428	Phatr44242	Anthranilate synthase. anthranilate synthetase. chorismate lyase	Predicted protein	0.999
PHATR_1682	Phatr44555	Phatr13428	Phatr44555	Anthranilate synthase. anthranilate synthetase. chorismate lyase	Predicted protein	0.891
PHATR_1682	Phatr45441	Phatr13428	Phatr45441	Anthranilate synthase. anthranilate synthetase. chorismate lyase	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly	0.993
PHATR_1682	Phatr45871	Phatr13428	Phatr45871	Anthranilate synthase. anthranilate synthetase. chorismate lyase	Predicted protein	0.999
PHATR_1682	SAS1	Phatr13428	Phatr54038	Anthranilate synthase. anthranilate synthetase. chorismate lyase	Regulator of chromatin silencing	0.997
Phatr11703	PHATR_1682	Phatr11703	Phatr13428	Predicted protein	Anthranilate synthase. anthranilate synthetase. chorismate lyase	0.999
Phatr11703	Phatr15481	Phatr11703	Phatr15481	Predicted protein	Predicted protein	0.999
Phatr11703	Phatr18579	Phatr11703	Phatr18579	Predicted protein	Predicted protein	0.999
Phatr11703	Phatr42495	Phatr11703	Phatr42495	Predicted protein	Predicted protein	0.999
Phatr11703	Phatr44047	Phatr11703	Phatr44047	Predicted protein	Predicted protein	0.999
Phatr11703	Phatr44242	Phatr11703	Phatr44242	Predicted protein	Predicted protein	0.999
Phatr11703	Phatr44555	Phatr11703	Phatr44555	Predicted protein	Predicted protein	0.857
Phatr11703	Phatr45441	Phatr11703	Phatr45441	Predicted protein	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly	0.993
Phatr11703	Phatr45871	Phatr11703	Phatr45871	Predicted protein	Predicted protein	0.999
Phatr11703	SAS1	Phatr11703	Phatr54038	Predicted protein	Regulator of chromatin silencing	0.947

page 1 of 6

Network

Cooccurrence

Experiments

Coexpression

Textmining

Neighborhood

Databases

Fusion

© STRING Consortium 2018

Credits

Access

Info

About