STRINGSTRING
Phatr45441 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45441" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45441Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)    
Predicted Functional Partners:
Phatr44555
Predicted protein (743 aa)
      
 
  0.998
Phatr45356
Predicted protein (479 aa)
      
      0.997
Phatr19647
Predicted protein (354 aa)
      
 
  0.988
Phatr51897
Predicted protein (531 aa)
      
 
  0.985
Phatr32646
Predicted protein (268 aa)
      
 
  0.982
Phatr8777
Predicted protein (110 aa)
      
 
  0.981
Phatr45888
Predicted protein (590 aa)
      
  0.981
Phatr32758
Predicted protein (483 aa)
      
  0.979
Phatr30585
Predicted protein (942 aa)
      
  0.979
Phatr3351
Predicted protein (281 aa)
      
 
  0.978
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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