STRINGSTRING
Phatr45451 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45451" - Formamidase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45451Formamidase (342 aa)    
Predicted Functional Partners:
Phatr29887
Predicted protein (564 aa)
   
 
  0.669
Phatr40650
Predicted protein (582 aa)
       
  0.667
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.623
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
         
  0.591
Phatr36398
Predicted protein (386 aa)
       
  0.576
Phatr42276
Predicted protein (1263 aa)
       
    0.569
Phatr7913
Predicted protein (76 aa)
       
  0.558
Phatr7910
Predicted protein (70 aa)
       
  0.558
Phatr55177
Spermine/spermidine synthase (299 aa)
       
  0.558
Phatr51460
Annotation not available (348 aa)
       
  0.558
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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