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Phatr45592 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45592" - 2-hydroxyacid dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr455922-hydroxyacid dehydrogenase (452 aa)    
Predicted Functional Partners:
PSAT
Phosphoserine transaminase (409 aa)
   
  0.988
PGAM_2
Phosphoglycerate mutase (226 aa)
       
  0.911
PGAM_3
Phosphoglycerate mutase (228 aa)
       
  0.911
PGAM_5
Predicted protein (221 aa)
       
  0.911
PGAM_1
Phosphoglycerate mutase (254 aa)
       
  0.911
PGAM_6
Phosphoglycerate mutase (282 aa)
       
  0.911
PGAM_4
Phosphoglycerate mutase (256 aa)
       
  0.911
Phatr41063
Predicted protein (174 aa)
         
    0.900
PSP
Phosphoserine phosphatase (242 aa)
 
 
  0.823
Phatr27166
Predicted protein (471 aa)
   
   
 
0.803
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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