STRINGSTRING
Phatr45673 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45673" - Beta-galactosidase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45673Beta-galactosidase (951 aa)    
Predicted Functional Partners:
Phatr29029
Predicted protein (574 aa)
       
      0.904
Phatr26837
Predicted protein (643 aa)
       
      0.904
Phatr3832
Predicted protein (349 aa)
         
  0.438
HemE_1
Uroporphyrinogen decarboxylase (431 aa)
           
  0.435
HemE_2
Uroporphyrinogen decarboxylase (409 aa)
           
  0.435
Phatr38631
6-phosphogluconolactonase (278 aa)
           
  0.433
Phatr50372
Predicted protein (1020 aa)
         
  0.406
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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