STRINGSTRING
Phatr45809 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45809" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45809Predicted protein (680 aa)    
Predicted Functional Partners:
Phatr12309
Predicted protein (134 aa)
     
  0.697
Phatr14572
Predicted protein (219 aa)
       
    0.686
Phatrdraft1638
Predicted protein (548 aa)
     
  0.664
Phatr43576
Predicted protein (483 aa)
     
  0.655
Phatr11593
Predicted protein (324 aa)
     
  0.640
Phatr13192
Predicted protein (74 aa)
     
  0.634
Phatr23164
Predicted protein (489 aa)
     
    0.606
Phatr26061
Predicted protein (552 aa)
     
    0.515
Phatr34712
Predicted protein (662 aa)
     
    0.513
Phatr50310
Predicted protein (699 aa)
     
    0.505
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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