STRINGSTRING
Phatr45841 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45841" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45841Predicted protein (331 aa)    
Predicted Functional Partners:
Phatr16932
Predicted protein (361 aa)
     
  0.998
Phatr24362
Predicted protein (328 aa)
     
  0.990
Phatr47271
Predicted protein (330 aa)
         
  0.948
Phatr28833
Predicted protein (464 aa)
     
 
  0.940
Phatr7108
Predicted protein (138 aa)
       
  0.937
Phatr49325
Predicted protein (343 aa)
         
  0.937
Phatr19000
Farnesyltranstransferase (337 aa)
     
 
  0.935
Phatr28577
Predicted protein (377 aa)
     
  0.828
Phatr13160
Predicted protein (314 aa)
         
  0.802
RabGDI
Predicted protein (446 aa)
     
  0.714
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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