STRINGSTRING
Phatr45848 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45848" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45848Predicted protein (276 aa)    
Predicted Functional Partners:
Phatr46543
Predicted protein (532 aa)
       
 
  0.966
Phatr17184
Predicted protein (445 aa)
       
 
  0.724
Phatr6789
Predicted protein (132 aa)
       
 
  0.610
Phatr49679
Predicted protein (430 aa)
       
 
  0.610
Phatr49040
Predicted protein (248 aa)
       
 
  0.610
Phatr47297
Predicted protein (416 aa)
       
 
  0.610
Phatr47078
Predicted protein (234 aa)
       
 
  0.610
Phatr35623
Predicted protein (233 aa)
       
 
  0.610
Phatr14808
Predicted protein (229 aa)
       
 
  0.610
Phatr5762
Predicted protein (236 aa)
     
 
  0.582
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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