STRINGSTRING
Phatr45854 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45854" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45854Predicted protein (1689 aa)    
Predicted Functional Partners:
Phatr4700
Predicted protein (325 aa)
     
  0.997
Sec13
Predicted protein (330 aa)
       
  0.997
Phatr24439
Predicted protein (357 aa)
     
  0.971
Phatr35311
Predicted protein (1849 aa)
     
  0.881
Phatr47393
Predicted protein (829 aa)
     
  0.838
Phatr29967
Predicted protein (871 aa)
     
 
  0.802
Phatr43752
Predicted protein (2360 aa)
     
  0.703
Phatr25666
Predicted protein (885 aa)
     
      0.673
Phatr35556
Predicted protein (1902 aa)
     
  0.670
Phatr42712
Predicted protein (219 aa)
     
  0.658
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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