STRINGSTRING
Phatr45993 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr45993" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr45993Predicted protein (322 aa)    
Predicted Functional Partners:
Phatr13281
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
        0.958
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
       
      0.944
Phatr24739
Predicted protein (1594 aa)
       
      0.944
rpl14
Predicted protein (143 aa)
     
      0.857
Phatr43574
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
        0.837
Phatr45441
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
        0.835
Phatr12679
Predicted protein (290 aa)
     
        0.833
Phatr51007
Predicted protein (296 aa)
     
        0.799
Phatr44687
Predicted protein (426 aa)
     
        0.791
Phatr14145
Predicted protein (516 aa)
     
        0.762
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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