STRINGSTRING
Phatr46156 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46156" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46156Predicted protein (699 aa)    
Predicted Functional Partners:
H2B-1a
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (116 aa)
       
    0.608
Phatr11823
Histone H2B (116 aa)
       
    0.608
Phatr44745
Predicted protein (1075 aa)
       
      0.604
Phatr16674
Predicted protein (376 aa)
       
  0.574
Phatr6698
Predicted protein (106 aa)
       
  0.562
NURF-55
Chromatin assembly factor subunit c (466 aa)
       
  0.547
Phatr51604
Predicted protein (509 aa)
       
  0.545
Phatr47011
Predicted protein (1431 aa)
       
  0.545
NURF-140
Imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit (1023 aa)
       
  0.545
Phatr231
Predicted protein (970 aa)
       
  0.545
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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