STRINGSTRING
Phatr46215 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46215" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46215Predicted protein (297 aa)    
Predicted Functional Partners:
Phatr46935
Predicted protein (689 aa)
       
      0.635
COPgamma
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (910 aa)
     
  0.598
Phatr5104
Predicted protein (251 aa)
     
  0.534
Phatr42126
Predicted protein (227 aa)
     
  0.534
Sec13
Predicted protein (330 aa)
     
  0.516
Sec61alpha
Transport protein Sec61 alpha subunit (472 aa)
     
 
  0.502
Sar1a
Predicted protein (192 aa)
     
  0.494
Sar1B
Predicted protein (174 aa)
     
  0.494
Phatr47270
Predicted protein (897 aa)
     
  0.483
Sec23
Predicted protein (759 aa)
     
  0.483
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (13%) [HD]