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STRINGSTRING
Phatr46259 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46259" - RNA helicase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46259RNA helicase (589 aa)    
Predicted Functional Partners:
Phatr16814
Predicted protein (662 aa)
     
 
  0.794
Phatr45356
Predicted protein (479 aa)
     
 
  0.788
Phatr19552
Predicted protein (529 aa)
   
 
  0.781
Phatr21557
Predicted protein (348 aa)
     
 
  0.752
Phatr13820
Predicted protein (282 aa)
     
 
  0.737
Phatr12679
Predicted protein (290 aa)
     
 
  0.710
Phatr32036
Predicted protein (801 aa)
     
 
  0.706
Phatr26035
Predicted protein (266 aa)
     
 
  0.695
Phatrdraft955
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1674 aa)
     
 
  0.693
Phatr46516
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1051 aa)
     
 
  0.693
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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