STRINGSTRING
Phatr46460 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46460" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46460Predicted protein (1448 aa)    
Predicted Functional Partners:
Phatr50229
Predicted protein (520 aa)
     
  0.998
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
  0.849
Phatr21557
Predicted protein (348 aa)
     
        0.652
Phatr42429
Predicted protein (625 aa)
     
 
  0.619
Phatr23959
Predicted protein; Binds the poly(A) tail of mRNA (605 aa)
       
  0.593
Phatr43574
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
        0.591
Phatr45681
Predicted protein (591 aa)
     
        0.586
Phatr44751
Predicted protein (376 aa)
   
   
  0.551
Phatr43504
Predicted protein (977 aa)
     
 
  0.545
Phatr47058
Predicted protein (606 aa)
     
      0.544
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (10%) [HD]