STRINGSTRING
Phatr46522 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46522" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46522Predicted protein (526 aa)    
Predicted Functional Partners:
Phatr44863
Predicted protein (956 aa)
     
      0.619
Phatr20608
Predicted protein (830 aa)
     
      0.619
Phatr49686
Predicted protein (686 aa)
     
 
  0.536
Phatr43732
Predicted protein; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria (1504 aa)
     
 
  0.536
Phatr13520
Predicted protein (127 aa)
       
      0.513
Phatr20773
Predicted protein (484 aa)
     
      0.449
Phatr11965
Predicted protein (194 aa)
     
      0.449
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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