STRINGSTRING
Phatr46600 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46600" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46600Predicted protein (459 aa)    
Predicted Functional Partners:
Phatr42758
Predicted protein (1346 aa)
     
  0.987
Phatr38931
Predicted protein (1031 aa)
     
  0.979
Phatr44561
Predicted protein (439 aa)
     
  0.979
Phatr47388
Predicted protein (1057 aa)
     
  0.934
Phatr18239
Predicted protein (1058 aa)
     
  0.838
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
  0.831
Phatr11409
Predicted protein (160 aa)
     
  0.829
APC3
Predicted protein (336 aa)
     
  0.764
Phatr54602
Predicted protein (740 aa)
     
  0.761
Phatr52685
Beta-glucan elicitor receptor (708 aa)
     
  0.761
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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