STRINGSTRING
Phatr46608 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46608" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46608Predicted protein (1443 aa)    
Predicted Functional Partners:
Phatr36569
Predicted protein (166 aa)
     
 
  0.947
CUL1_3
CULlin protein 1 (741 aa)
     
 
  0.947
CUL1_1
CULlin protein 3 (762 aa)
     
 
  0.947
CUL1_2
CULlin protein 4 (821 aa)
     
 
  0.819
Phatr45915
Predicted protein (1242 aa)
       
      0.546
Phatr24186
Predicted protein (1088 aa)
     
      0.514
CDC6
Predicted protein (1107 aa)
     
      0.507
Phatr51277
Predicted protein (373 aa)
       
      0.452
CSN5
COP9 SigNalosome subunit 5 (370 aa)
     
 
  0.448
UBA3
Ubiquitin-activating enzyme E1, protein 3 (462 aa)
     
   
  0.440
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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