STRINGSTRING
Phatr46641 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46641" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46641Predicted protein (1036 aa)    
Predicted Functional Partners:
Phatr7639
Predicted protein (124 aa)
   
  0.904
sufD
FeS assembly protein suf (690 aa)
   
  0.766
IscU
Iron-sulphur assembly protein isc; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (160 aa)
     
  0.728
METH
Methionine synthase (1245 aa)
       
  0.719
IscS
Precursor of desulfurase cysteine desulfurase IscS (400 aa)
       
  0.706
CsdB
Selenocysteine lyase (386 aa)
       
  0.706
Phatrdraft278
Predicted protein (77 aa)
       
  0.650
Phatr46593
Predicted protein (225 aa)
       
  0.650
Phatr16693
Predicted protein (195 aa)
       
  0.650
Phatr7780
Predicted protein (122 aa)
   
 
  0.646
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (7%) [HD]