STRINGSTRING
Phatr46643 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46643" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46643Predicted protein (606 aa)    
Predicted Functional Partners:
Phatr47759
Predicted protein (790 aa)
     
  0.935
Phatr43990
Predicted protein (313 aa)
     
  0.778
Phatr44632
Predicted protein (1440 aa)
     
  0.631
Phatr17974
Predicted protein (475 aa)
       
      0.491
Phatr13095
Predicted protein (97 aa)
     
    0.473
Phatr45697
Predicted protein (1067 aa)
     
 
    0.465
Phatr47393
Predicted protein (829 aa)
     
 
    0.404
Phatr42753
Predicted protein (1678 aa)
     
 
    0.403
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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