STRINGSTRING
Phatr46672 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46672" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46672Predicted protein (1347 aa)    
Predicted Functional Partners:
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.592
Phatr54983
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
   
 
  0.524
Phatr52678
DNA polymerase (2155 aa)
           
  0.507
POLA
DNA polymerase (1147 aa)
           
  0.506
Phatr47656
Transporter (1166 aa)
         
  0.450
Phatr51092
Glutamine synthetase (416 aa)
     
   
  0.442
Phatr29702
Predicted protein (878 aa)
         
  0.438
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
         
  0.436
Phatr47653
Transporter (232 aa)
         
  0.428
Phatr20424
Urea transporter (704 aa)
   
   
  0.417
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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