STRINGSTRING
Phatr46698 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46698" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46698Predicted protein (464 aa)    
Predicted Functional Partners:
RPA2
Predicted protein (270 aa)
       
  0.761
RFC4
Predicted protein (350 aa)
     
  0.726
RFC3
Predicted protein (361 aa)
     
  0.720
Phatr45914
Predicted protein (746 aa)
       
 
  0.706
Phatr51604
Predicted protein (509 aa)
     
  0.654
Phatr47011
Predicted protein (1431 aa)
     
  0.654
NURF-140
Imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit (1023 aa)
     
  0.654
Phatr231
Predicted protein (970 aa)
     
  0.654
RFC5
Predicted protein (338 aa)
     
  0.606
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
  0.603
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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