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STRINGSTRING
Phatr4674 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr4674" - Predicted protein in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr4674Predicted protein (252 aa)    
Predicted Functional Partners:
Phatr50848
Elongator complex protein 3; Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (544 aa)
     
 
  0.780
MCM5
Predicted protein; Belongs to the MCM family (667 aa)
     
   
  0.764
Phatr9446
Predicted protein (220 aa)
     
 
  0.759
Phatr43627
Predicted protein (1396 aa)
     
 
  0.702
Phatr1690
Predicted protein (495 aa)
   
   
  0.680
Phatr19191
Predicted protein (289 aa)
     
 
  0.618
Phatr34373
Adenylyltransferase and sulfurtransferase MOCS3 homolog; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of the sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylate (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards U [...] (418 aa)
   
 
  0.605
Phatr20318
Predicted protein (460 aa)
   
 
  0.605
Phatr40111
Predicted protein (308 aa)
   
 
  0.586
PHATR_3578
Pseudouridine synthase (293 aa)
     
   
  0.551
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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