STRINGSTRING
Phatr46764 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46764" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46764Predicted protein (683 aa)    
Predicted Functional Partners:
Phatr12309
Predicted protein (134 aa)
       
      0.944
Phatr18217
Predicted protein (326 aa)
       
 
  0.901
Phatrdraft1638
Predicted protein (548 aa)
     
 
  0.879
Phatr54743
Predicted protein (347 aa)
     
      0.871
Phatr48587
Predicted protein; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (300 aa)
       
      0.547
Phatr44516
Predicted protein (208 aa)
       
      0.547
Phatr8270
Predicted protein (84 aa)
     
      0.500
Phatr8269
Predicted protein (77 aa)
     
      0.500
Phatr46145
Predicted protein (393 aa)
     
      0.500
Phatr16633
Predicted protein (81 aa)
     
      0.500
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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