STRINGSTRING
Phatr46865 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46865" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46865Predicted protein (394 aa)    
Predicted Functional Partners:
Phatr47361
Predicted protein (489 aa)
     
  0.811
Phatr43711
Predicted protein (580 aa)
     
  0.811
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (421 aa)
   
 
  0.573
Phatr46971
Predicted protein (696 aa)
   
 
  0.573
XPF
Excision repair cross-complementing rodent repair deficiency, complementation group 4 (975 aa)
     
 
  0.570
Phatr12645
Predicted protein (199 aa)
     
 
  0.543
Phatr50302
Predicted protein (249 aa)
   
   
  0.441
Phatr46782
Predicted protein (352 aa)
   
   
  0.441
Phatr35818
Predicted protein (121 aa)
         
  0.434
Phatr48206
Predicted protein (794 aa)
   
 
  0.404
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (4%) [HD]