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rbcMT protein (Phaeodactylum tricornutum) - STRING interaction network
"rbcMT" - Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcMTRibulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I (575 aa)    
Predicted Functional Partners:
Phatr28979
Predicted protein (164 aa)
       
 
  0.516
Phatr45993
Predicted protein (322 aa)
       
 
  0.472
Phatr27838
Predicted protein (1040 aa)
       
      0.440
Phatr16875
Predicted protein (164 aa)
     
   
  0.421
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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