STRINGSTRING
Phatr4700 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr4700" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr4700Predicted protein (325 aa)    
Predicted Functional Partners:
Phatr45854
Predicted protein (1689 aa)
     
  0.997
Sec13
Predicted protein (330 aa)
     
0.983
Phatr38474
Predicted protein (184 aa)
     
  0.924
Phatr13834
Predicted protein (172 aa)
       
      0.913
Phatr35311
Predicted protein (1849 aa)
     
  0.893
Phatr44239
Predicted protein (1180 aa)
     
 
  0.805
Phatr46440
Predicted protein (1030 aa)
         
    0.800
Phatr47393
Predicted protein (829 aa)
     
  0.793
Phatr43680
Predicted protein (1458 aa)
       
 
  0.747
Phatr23164
Predicted protein (489 aa)
     
  0.703
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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