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STRINGSTRING
Phatr47011 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47011" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47011Predicted protein (1431 aa)    
Predicted Functional Partners:
Phatr43517
Predicted protein (1255 aa)
     
 
  0.722
Phatr54092
Chromatin remodeling-related protein (674 aa)
     
 
  0.685
MCM3
Predicted protein; Belongs to the MCM family (551 aa)
     
 
  0.635
Phatr43730
Predicted protein (229 aa)
     
 
  0.611
Phatr18239
Predicted protein (1058 aa)
     
 
  0.609
MCM5
Predicted protein; Belongs to the MCM family (667 aa)
     
 
  0.593
NURF-55
Chromatin assembly factor subunit c (466 aa)
     
 
  0.593
Phatr47619
Predicted protein (1565 aa)
     
 
  0.590
H2A-m1
Histone H2A (138 aa)
     
 
  0.566
Phatr43759
Predicted protein (462 aa)
     
 
  0.558
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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