STRINGSTRING
Phatr47017 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47017" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47017Predicted protein (1144 aa)    
Predicted Functional Partners:
Phatr9020
Predicted protein (364 aa)
       
  0.930
Phatr11954
Predicted protein (149 aa)
       
  0.867
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
  0.700
Phatr24915
Predicted protein (791 aa)
     
  0.700
Phatr10282
Predicted protein (614 aa)
     
  0.700
POLA
DNA polymerase (1147 aa)
       
  0.680
Phatr54677
DNA polymerase (1087 aa)
       
  0.680
Phatr52678
DNA polymerase (2155 aa)
       
  0.680
Phatr50124
Predicted protein (1144 aa)
       
  0.680
Phatr48846
Predicted protein (627 aa)
       
  0.406
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (5%) [HD]