STRINGSTRING
Phatr4708 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr4708" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr4708Predicted protein (220 aa)    
Predicted Functional Partners:
Phatr19324
Predicted protein (554 aa)
   
 
  0.735
Phatr19901
Predicted protein (900 aa)
       
  0.698
Phatr50848
Predicted protein (544 aa)
     
 
  0.660
Phatr47449
Predicted protein (236 aa)
     
 
  0.557
Phatr9309
Predicted protein (284 aa)
     
 
  0.547
Phatr23646
Predicted protein (648 aa)
     
 
  0.547
Phatr17504
Predicted protein (673 aa)
     
 
  0.547
Phatr16391
Predicted protein (590 aa)
     
 
  0.547
Phatr16182
Predicted protein (514 aa)
     
 
  0.547
Phatr10524
Predicted protein (256 aa)
     
 
  0.547
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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