STRINGSTRING
NRPS protein (Phaeodactylum tricornutum) - STRING interaction network
"NRPS" - Non ribosomal peptide synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NRPSNon ribosomal peptide synthase (1367 aa)    
Predicted Functional Partners:
Phatr41702
Predicted protein (671 aa)
   
   
  0.940
Phatr6940
Predicted protein (129 aa)
     
  0.896
Phatr51757
Cytochrome P450 (528 aa)
     
  0.896
Phatr46438
Predicted protein (565 aa)
     
  0.896
Phatr43467
Predicted protein (488 aa)
     
  0.896
Phatr43466
Predicted protein (487 aa)
     
  0.896
Phatr34027
Predicted protein (267 aa)
     
  0.896
Phatr33568
Predicted protein (266 aa)
     
  0.896
Phatr31339
Predicted protein (482 aa)
     
  0.896
LUT1-2
Lutein deficient 1-like protein (769 aa)
     
  0.896
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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