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Phatr47119 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47119" - Nucleotide-binding protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47119Nucleotide-binding protein (459 aa)    
Predicted Functional Partners:
DDB1
Damage-specific DNA binding protein 1 (1284 aa)
       
  0.974
CSN5
COP9 SigNalosome subunit 5 (370 aa)
       
  0.690
Phatr47179
Predicted protein (902 aa)
       
  0.621
Phatr24775
Predicted protein (711 aa)
       
  0.621
Phatr38848
Predicted protein (552 aa)
     
 
  0.611
Phatr45764
Predicted protein (1603 aa)
       
    0.598
Phatr45703
Predicted protein (2426 aa)
       
    0.598
CUL1_2
CULlin protein 4 (821 aa)
       
  0.589
TFIIH-p44
Suppressor of stem-loop protein 1 (413 aa)
       
  0.579
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
 
  0.573
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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