STRINGSTRING
Phatr47179 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47179" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47179Predicted protein (902 aa)    
Predicted Functional Partners:
Phatr10199
Predicted protein (203 aa)
       
  0.974
Phatr12311
Predicted protein (128 aa)
   
  0.801
Phatr46007
Predicted protein (773 aa)
   
  0.740
Phatr26634
Predicted protein (233 aa)
   
  0.739
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
  0.731
NURF-140
Imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit (1023 aa)
   
0.683
Phatr231
Predicted protein (970 aa)
   
0.683
Phatr47011
Predicted protein (1431 aa)
   
0.681
Phatr38848
Predicted protein (552 aa)
     
  0.680
Phatr46863
Predicted protein (1597 aa)
     
  0.655
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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